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New Nature Communications publication by Mann & Theis Groups harnesses the benefits of large-scale peptide collisional cross section (CCS) measurements and deep learning for 4D-proteomics
Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas | Scientific Data
Generating high quality libraries for DIA MS with empirically corrected peptide predictions | Nature Communications
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Nature Methods
Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology | Nature Communications
Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics - ScienceDirect
DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput | Nature Methods
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods
Deep Proteomics Using Two Dimensional Data Independent Acquisition Mass Spectrometry | Analytical Chemistry
Multiplexed peptide analysis using data-independent acquisition and Skyline | Nature Protocols
A streamlined platform for analyzing tera-scale DDA and DIA mass spectrometry data enables highly sensitive immunopeptidomics | Nature Communications
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS | Scientific Data
Technical comparison of DDA and different types of DIA in a biological... | Download Scientific Diagram
DIA mass spectrometry | Nature Methods
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications
Mass Spectrometry Protocols and Methods | Springer Nature Experiments
Mass-spectrometric exploration of proteome structure and function | Nature
Time-resolved in vivo ubiquitinome profiling by DIA-MS reveals USP7 targets on a proteome-wide scale | Nature Communications
General workflows for processing DIA spectra. (A) Generation of... | Download Scientific Diagram
Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction - ScienceDirect
Use of Hybrid Data-Dependent and -Independent Acquisition Spectral Libraries Empowers Dual-Proteome Profiling | Journal of Proteome Research
